Daily Papers

We introduce rd-spiral, an open-source Python library for simulating 2D reaction-diffusion systems using pseudo-spectral methods. The framework combines FFT-based spatial discretization with adaptive Dormand-Prince time integration, achieving exponential convergence while maintaining pedagogical clarity. We analyze three dynamical regimes: stable spirals, spatiotemporal chaos, and pattern decay, revealing extreme non-Gaussian statistics (kurtosis >96) in stable states. Information-theoretic metrics show 10.7% reduction in activator-inhibitor coupling during turbulence versus 6.5% in stable regimes. The solver handles stiffness ratios >6:1 with features including automated equilibrium classification and checkpointing. Effect sizes (delta=0.37--0.78) distinguish regimes, with asymmetric field sensitivities to perturbations. By balancing computational rigor with educational transparency, rd-spiral bridges theoretical and practical nonlinear dynamics.

Global stability of differentially rotating plasma is investigated using a generalized effective potential. We first, for a current-free system, obtain a general form of an effective potential in terms of the free energies of global curvature and gradients of rotation for non-axisymmetric disturbances. We then examine the stability of differentially rotating disks for several rotation profiles and present the associated effective potential for the onset of these instabilities in the MHD regime. In particular, results for global axisymmetric magnetorotational instability (MRI) as well as local and global non-axisymmetric modes are presented. The latter constitute two distinct non-axisymmetric modes, a high frequency local MRI and a global low-frequency non-axisymmetric mode (the magneto-curvature mode, introduced in Ebrahimi&Pharr, ApJ 2022), confined either between two Alfv\'enic resonances or an Alfv\'enic resonance and a boundary.

We develop a linear perturbative formalism to compute the response of an inhomogeneous stellar disk embedded in a non-responsive dark matter halo to perturbations like bars, spiral arms and satellite galaxy encounters. Without self-gravity to reinforce it, the response of a Fourier mode phase mixes away due to an intrinsic spread in the vertical (Omega_z), radial (Omega_r) and azimuthal (Omega_phi) frequencies, giving rise to local phase-space spirals. Collisional diffusion due to scattering of stars by structures like giant molecular clouds causes super-exponential damping of the phase-spiral amplitude. The z-v_z phase-spiral is 1-armed (2-armed) for vertically anti-symmetric (symmetric) bending (breathing) modes. Only transient perturbations with timescales (tau_{P}) comparable to the vertical oscillation period (tau_z sim 1/Omega_z) trigger z-v_z phase-spirals. Each (n,l,m) mode of the response to impulsive (tau_{P}<tau=1/(nOmega_z+lOmega_r+mOmega_phi)) perturbations is power law (sim tau_{P}/tau) suppressed, but that to adiabatic (tau_{P}>tau) perturbations is exponentially weak (sim left[-left(tau_{mathrm{P}/tauright)^alpharight]}) except resonant (tauto infty) modes. Slower (tau_{P}>tau_z) perturbations, e.g., distant encounters with satellite galaxies, induce stronger bending modes. If the Gaia phase-spiral was triggered by a satellite, Sagittarius is the leading contender as it dominates the Solar neighborhood response of the Milky Way disk to satellite encounters. However, survival against collisional damping necessitates that the impact occurred within sim 0.6-0.7 Gyr ago. We discuss how the detailed galactic potential dictates the phase-spiral shape: phase mixing occurs slower and phase-spirals are less wound in the outer disk and in presence of an ambient halo.

The capacity to precisely edit genomes has outpaced our ability to predict the consequences. A cell can be genetically perfect and therapeutically useless: edited exactly as intended, yet unstable, drifting toward unintended fates, or selected for properties that compromise safety. This paradox reflects a deeper gap in how we evaluate biological intervention. Current frameworks excel at measuring what was done to a cell but remain blind to what the cell has become. We argue that this blindness stems from treating cells as collections of independent variables rather than as dynamical systems occupying positions on high-dimensional state manifolds. Drawing on Waddington's epigenetic landscape, we propose geometric stability as a missing axis of evaluation: the directional coherence of cellular responses to perturbation. This metric distinguishes interventions that guide cells coherently toward stable states from those that scatter them across the state manifold. Validation across diverse perturbation datasets reveals that geometric stability captures regulatory architecture invisible to conventional metrics, discriminating pleiotropic master regulators from lineage-specific factors without prior biological annotation. As precision medicine increasingly relies on cellular reprogramming, the question shifts from ``did the intervention occur?'' to ``is the resulting state stable?'' Geometric stability provides a framework for answering.

Reliable deployment of language models requires two capabilities that appear distinct but share a common geometric foundation: predicting whether a model will accept targeted behavioral control, and detecting when its internal structure degrades. We show that geometric stability, the consistency of a representation's pairwise distance structure, addresses both. Supervised Shesha variants that measure task-aligned geometric stability predict linear steerability with near-perfect accuracy (ρ= 0.89-0.97) across 35-69 embedding models and three NLP tasks, capturing unique variance beyond class separability (partial ρ= 0.62-0.76). A critical dissociation emerges: unsupervised stability fails entirely for steering on real-world tasks (ρapprox 0.10), revealing that task alignment is essential for controllability prediction. However, unsupervised stability excels at drift detection, measuring nearly 2times greater geometric change than CKA during post-training alignment (up to 5.23times in Llama) while providing earlier warning in 73\% of models and maintaining a 6times lower false alarm rate than Procrustes. Together, supervised and unsupervised stability form complementary diagnostics for the LLM deployment lifecycle: one for pre-deployment controllability assessment, the other for post-deployment monitoring.

The Milky Way is a complex ecosystem, for which we can obtain detailed observations probing the physical mechanisms determining the interstellar medium. For a detailed comparison with observations, and to provide theories for missing observables, we need to model the Milky Way as closely as possible. However, details of the Galactic structure are not fully defined by observations, raising the need for more generalized models. With the Rhea simulations we present a set of Milky Way like simulations, containing detailed physics of the interstellar medium, as well as star formation and stellar feedback. We conduct two simulations that differ in the gravitational potential: one fitted to several structural details derived from observations, the other just reproducing the most basic quantities. We find little difference in the overall morphology except for the bar region, which funnels gas towards the Galactic inner region and therefore prevents quenching in the center. Despite differences with galacto-centric radius, the global star formation rate is almost identical in both setups. A spiral arm potential does not influence properties of groups of formed stars. A bar potential, however, lowers size and formation time of those groups. We therefore conclude for a spiral arm potential to have little influence on star formation in the Galaxy, except for producing long-lived spiral structures instead of transient ones. A Galactic bar potential has noticeable influence on star formation mainly within the innermost 2.5kpc.

Galactic rotation curves are crucial for understanding the distribution of mass in galaxies. Despite advances in precision observations, there are discrepancies between the inferred mass from luminosity and the observed rotational velocities, often attributed to dark matter. While traditional parametric models provide valuable insights, they struggle with complex galactic features like prominent bulges and non-circular motions. In this study, we apply artificial neural networks to generate robust, data-driven models, tailored to each galaxy, for the rotation curves of spiral galaxies using high-quality observational data. Our approach demonstrates that neural networks can effectively capture the intricate structure of rotation curves without relying on predefined astrophysical assumptions. By comparing the data-based models with the Navarro-Frenk-White model under two different assumptions for the stellar component, we classify galaxies based on the model that best fits their rotation curves, offering insights into the limitations and strengths of both theoretical and data-based methods. This work highlights the potential of machine learning techniques in identifying galaxies whose dynamics are not well captured by standard theoretical models, pointing to the need for more refined physical descriptions.

In this paper, we introduce fundamental notions of homotopy theory, including homotopy excision and the Freudenthal suspension theorem. We then explore framed cobordism and its connection to stable homotopy groups of spheres through the Pontryagin-Thom construction. Using this framework, we compute the stable stems in dimensions 0, 1, and 2. This work is primarily expository, revisiting proofs from Pont1 with slight modifications incorporating modern notation. Furthermore, in the final section, we discuss 2-dimensional framed manifolds with Arf invariant one and examine why the result of Pont2 regarding π_2^S is incorrect.